deprekate

PHANOTATE

PHANOTATE: a tool to annotate phage genomes.

PHACTS

A simple program to classify the lifestyle of phages.

fastpath

A program to find the path through a network of nodes.

prfect

Software to predict the occurence of programmed ribosomal frameshifting in bacterial, phage, and viral genomes

circualign

A tool to align circular genomes on a common feature

RepeatFinder

A python package to quickly find repeats in a DNA sequence

kmeans

A python implementation of the kmeans algorithm that functions as a drop in for sklearn

genotate

Prokaryotic and phage genome annotation tool

aragorn

tRNA and tmRNA finding

goodorfs

Code to classify open reading frames into coding and noncoding

HotKnots

Fast, and best, DNA/RNA folding algorithm

genbank

Python code to work with Genbank files

2bitSeq

CodingFrame

A tool to identify which of the six frames of a DNA backbone is the protein coding frame

dedupe

:id: A python library for accurate and scalable fuzzy matching, record deduplication and entity-resolution.

fasta36

A python port of the fasta36 genomic sequence search code

find_overlaps

fix_names

function_align

Code to multiple-align sets of ordered genes by their function

genbank_template

A boilerplate template that uses the genbank pypi package to work with genbank files

ggVennDiagram

A 'ggplot2' implement of Venn Diagram.

gloome_tools

Script to mess with gloome output

LinearFold

The new source code of the LinearFold, linear-time prediction for RNA secondary structures

PhANNs

protdist

A python script to run protdist easily

pytorch_multi_node

revcomp

seq-align

Fast, portable C implementations of Needleman-Wunsch and Smith-Waterman sequence alignment

seqdbmaker

Scripts to create a sequence database

tensorflow

An Open Source Machine Learning Framework for Everyone