denproc / mrirecon

MRI Reconstruction Toolbox PyTorch

MRI Reconstruction Toolbox in PyTorch

MRI Reconstruction Toolbox offers a collection of the most common MRI reconstruction algorithms implemented in PyTorch. The Toolbox facilitates the usage of reconstruction methods as a part of Deep Learning pipelines in medical domain. Our package takes advantage of batched matrix operations, which can be performed on both CPU and GPU devices.

Available Algorithms

• SENSE reconstruction for parallel imaging (pdf)
• kt-SENSE reconstruction for dynamic magnetic resonance imaging (MRI) (pdf)

Installation

MRI Reconstruction Toolbox in PyTorch can be installed using pip or git.

If you use pip, you can install it with:

$ pip install mrirecon

If you want to use the latest features straight from the master, clone MRI Reconstruction repo:

git clone https://github.com/denproc/mrirecon.git
cd mrirecon
python setup.py install

Citation

If you use in your project, please, cite it as follows.

@misc{mrirecon,
  title={MRI Reconstruction Toolbox in PyTorch},
  url={https://github.com/denproc/mrirecon},
  note={Open-source software available at https://github.com/denproc/mrirecon},
  author={Denis Prokopenko},
  year={2022},
}

Contacts

Denis Prokopenko - @denproc - [e-mail]