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Daniel Ence's repositories

snakemake_pipelines

snakemake pipelines. It is what it is.

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vcf2joinmap

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10X_fastq_filter

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deconv_benchmark

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dence.github.io

Daniel builds a website!

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Fr1_filtering_scripts

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GFF3_tools

Tools that address specific GFF3 manipulation problems that I encounter

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overrepresented_trichomonad_gene_families

working with custom classification databases for taxonomer

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PAV_segregants

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pinesnp_shiny

shiny app to annotate SNPs from pine projects

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piney_scripts

scripts written for pinus taeda L. projects

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rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

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rnaseq_star_iseq_trial

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rnastar_deseq2_isoseq_trial

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rnastar_deseq2_MeJA_timecourse

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rnastar_dseq2_old_RNAseq

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snakemake_pipeline_kallisto_deseq2

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test_snakemake

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test_workflow

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trichy_scripts

scripts written for the trichomonas vaginalis reannotation paper

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Tvaginalis_TE_polymorphism

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vcf2LD

Using brentp's cy2vcf to calcululate LD's in a segregating population.

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vcf_filters

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wham

All-things-BAM

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dence-ds-cookiecutter

cookiecutter template repo with everything setup just how I like it.

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