definitelysean

enrichR

A hacky little interface to call the Enrichr functional enrichment tool from R.

sgaphd

Sean Gets A PhD: Silly Utility Functions

brite-workshop-R

Instructional materials in basic R programming & a walkthrough of an RNA-seq differential expression analysis

celda

Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data

celda-compbiomed

Bayesian Hierarchical Modeling for Clustering Single Cell RNA-Seq Data

cruzdb

python access to UCSC genomes database

definitelysean.github.io

feature-viewer

Library to visualize protein sequence features in javascript using D3 - From SIB CALIPHO group; neXtProt project

simple-microarray-analysis

Some examples of simple analyses you can perform on microarray data from the comfort of your own home!

tableONE

A simple package for making "Table One" study population tables

headlessGSEA

Drive the Broad Institute GSEA Application From R

Inkscape-JPEG-export-extension

This is a small extension that allows to export a selection directly in jpeg format from inkscape. Actually this simply create a tmp png and then convert it to jpeg using imagemagick.

metabolic_modelling_jupyter_tutorial

nf-RNA_Seq_Preprocess

PathoScope

Pathoscope: Species identification and strain attribution with unassembled sequencing data

REDItools2

singleCellTK

varsome-api-client-python

Example client programs for Saphetor's VarSome annotation API