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deeptools / pyBigWig

A python extension for quick access to bigWig and bigBed files

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numpy support broken in 0.3.18?

francois-a opened this issue · comments

commented

Hi, is there an issue with numpy compatibility in 0.3.18? I'm seeing the following:

pip3 install pyBigWig=="0.3.17"
python3 -c "import pyBigWig; print(pyBigWig.numpy)"
1

pip3 install pyBigWig=="0.3.18"
python3 -c "import pyBigWig; print(pyBigWig.numpy)"
0

Thanks for looking into it.

commented

It works fine, for example the one available via conda is compiled with support for numpy. Numpy needs to be installed before pyBigWig for that to work.