Giters
deeptools
/
deepTools
Tools to process and analyze deep sequencing data.
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Stargazers:
672
Watchers:
37
Issues:
933
Forks:
208
deeptools/deepTools Issues
Typo/Bug in heatmapper.py script
Updated
11 days ago
Comments count
1
Could not install deeptools by conda
Updated
2 months ago
Comments count
2
bw files "No common chromosomes found" when it's from the same species and assemblies
Updated
2 months ago
Comments count
1
Why enrichment of TSS and TES region are similar when using scale-region
Updated
2 months ago
Comments count
1
computeMatrix on 2 regions with replicates
Updated
2 months ago
Does alignmentSieve not support single-ended sequencing data?
Updated
3 months ago
How to annotate a region in Heatmap?
Updated
3 months ago
Clustering regions in plotHeatmap
Updated
3 months ago
Comments count
1
Unexpected keyword argument 'pdd_inches'
Updated
4 months ago
bamCoverage [multiBamCoverage]
Updated
4 months ago
Comments count
1
bamcoverage bedgraph sorting for SEACR
Closed
4 months ago
Documentation clarification needed for `--normalizeUsing` option in `bamCoverage`
Updated
4 months ago
RNA-seq bam to bw
Updated
5 months ago
ISSUES for scaling calculation
Updated
5 months ago
"502 Proxy Error" when using bigwigCompare
Closed
5 months ago
Comments count
1
Using just the read ends in bamCoverage
Updated
5 months ago
black bars in plotheatmap
Closed
5 months ago
Comments count
3
What is the samtools flag used in bamPEFragment?
Updated
5 months ago
Unable to Install Deeptools via Conda: No Support Found for Python 3.10
Closed
5 months ago
Comments count
1
ERROR: Could not build wheels for deeptoolsintervals, py2bit, which is required to install pyproject.toml-based projects
Closed
6 months ago
Comments count
11
plotHeatmap set multiple yMax values error
Closed
6 months ago
Comments count
1
correctGCbias error
Closed
6 months ago
Comments count
2
bamCoverage: error: argument --outFileName/-o: xxdir/sss/ddd/bugwig.bw file can't be opened for writing
Closed
6 months ago
Comments count
1
Can I directly ajdust the height ratio of the subplots when using several bed files?
Closed
6 months ago
Comments count
1
Why does alignmentSieve output bam files with no sequence / base quality?
Closed
6 months ago
Comments count
1
the conflict about the pheatmap and multibigwigsummary results
Updated
6 months ago
Comments count
1
plotFingerprint bigwig support
Updated
6 months ago
Comments count
1
Heatmap plotting and interpretation
Closed
6 months ago
Comments count
1
ValueError: could not broadcast input array from shape (11000,) into shape (4400,)
Closed
6 months ago
Comments count
2
How to control the color range of the image
Closed
6 months ago
Comments count
2
deepTools issue with deepBlue
Closed
6 months ago
Comments count
6
deeptools k-means clustering
Closed
6 months ago
Comments count
1
Metagene plot with cis and trans chip-seq signals
Closed
6 months ago
plotHeatmap.py fails because direct matplotlib.tight_layout use was deprecated in matplotlib 3.6.0
Closed
7 months ago
Comments count
1
deepTools-3.5.4 :: estimateScaleFactor :: typo
Closed
8 months ago
Comments count
1
Effective genome size T2T-CHM13 reference genome
Closed
8 months ago
Comments count
2
A colormap named "rocket" is already registered.
Closed
9 months ago
Comments count
1
Heatmap gene deletion issues
Closed
10 months ago
Comments count
1
Current documentation is missing information
Closed
10 months ago
Comments count
1
There is no setup.py file
Closed
10 months ago
Comments count
2
AttributeError: module 'numpy' has no attribute 'float'.
Closed
10 months ago
Comments count
1
Question about different information included in the input bed file would generate totally different Metagene Plot
Updated
a year ago
Display the name of genes
Updated
a year ago
issue with multibigwigsummary
Updated
a year ago
bug in alignmentSieve --ATACshift
Updated
a year ago
`--skipNonCoveredRegions`/`--skipNAs` not working for `bigwigCompare` in sparse data
Updated
a year ago
plotCorrelation - ValueError: rotation must be 'vertical', 'horizontal' or a number, not 45
Closed
a year ago
Comments count
2
Problem with inconsistent lines output from K-means clustering
Updated
a year ago
problem with methylation BigWig
Updated
a year ago
bamCoverage --extendReads, defaultFragmentLength can be 0 causing program to fail
Updated
a year ago
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