google-deepmind / alphafold

Open source code for AlphaFold.

google-deepmind/alphafold Issues

ValueError: Could not find CIFs
Updated 12 days ago2
ValueError: Minimization failed after 100 attempts.
Updated 24 days ago3
FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmpzszd_m92/output.a3m'
Updated a month ago
AttributeError: module 'jax' has no attribute 'linear_util'
Updated a month ago4
I am unable to run the fourth step normally, the following is the error code
Updated a month ago5
An error free installation package
Updated a month ago1
Can I use a custom PDB file for multimer prediction
Updated a month ago
The definition of bins in Predicted Aligned Error Head(PAE) may be wrong
Updated a month ago
How to get iPAE
Updated a month ago
AlphaFold uses the wrong resolution field during structure parsing
Closed 2 months ago2
Database Installation
Updated 2 months ago
Problem with step four in colabpro
Updated 2 months ago
` HHSearch failed` with no `stdout` or `stderr` output
Updated 2 months ago5
AttributeError: module 'haiku' has no attribute 'custom_creator'
Updated 2 months ago1
Minimizing failing due to CUDA error
Updated 2 months ago
RuntimeError: HHblits failed. Unrecognized HMM file format in '468479486'
Updated 2 months ago
Issue with missing templates during Multimer Mode running
Updated 2 months ago
How do I know when to update my local database?
Updated 2 months ago
--model_preset=multimer: command not found
Updated 2 months ago
Fatal Python error: Segmentation fault
Updated 2 months ago
HHblits query is running time too long!
Updated 2 months ago3
JAX 0.4.14 jaxlib cudnn error - non-docker installation
Updated 2 months ago2
The proper way to find the maximum subbatch_size?
Updated 2 months ago
Getting more than 25 predicted models for multimer mode
Closed 3 months ago4
Run multimer with a "single receptor" and "multiple partners"
Updated 3 months ago5
Does it cost money to download the dataset or not?
Closed 3 months ago
Downloading mmCIF files problem
Closed 3 months ago2
prediction results are not consistent
Updated 3 months ago2
404 Client Error for http+docker://localhost/v1.44/images/create?tag=latest&fromImage=alphafold: Not Found ("pull access denied for alphafold, repository does not exist or may require 'docker login': denied: requested access to the resource is denied")
Updated 3 months ago6
error whole running alphafold google colab
Updated 3 months ago2
CONDA will not install
Updated 3 months ago1
Failing to install; Colab notebook version
Updated 3 months ago1
HMMER MSAs aren't saved and repeated when running with --use_precomputed_msas=True
Updated 3 months ago10
bash redirection error
Closed 3 months ago1
Install third-party software stalls at 17%
Updated 4 months ago1
docker.errors.APIError: 500 Server Error for http+docker://localhost/v1.43/containers/ee2565cd6294bdf23537e9fb81814d89cb240f8c02b23f24a0926e3c66b44aea/start: Internal Server Error ("could not select device driver "nvidia" with capabilities: [[gpu]]")
Updated 4 months ago2
ImportError: cannot import name 'SCOPData' from 'Bio.Data'
Updated 4 months ago5
Attention docstring missing head dimension for arguments mask and nonbatched_bias
Updated 4 months ago
Calculation of ipTM score for multimers greater than a dimer
Updated 4 months ago
SymbolAlreadyExposedError: Symbol Ones is already exposed as ()
Closed 4 months ago1
Notebook - Cell 4 "Making Prediction" - SymbolAlreadyExposedError
Closed 4 months ago4
AlphaFold Colab crash at 'Search genetic databases' stage: Keras Zeros initializer fault...
Closed 4 months ago2
Error On Section 4, Symbol Zeros is already exposed as ()
Closed 4 months ago5
RMSD95 Definition
Updated 4 months ago
Missing function in docker build
Updated 4 months ago
Can I debug the code in the pycharm?
Updated 4 months ago1
alphafold outputs only have msas
Updated 4 months ago4
Resource not found: pdb70_from_mmcif_200401.tar.gz
Closed 5 months ago1
AlphaFold Stuck at hhblits Step on Cluster Compute Node
Updated 5 months ago
HOW to change MSA
Updated 5 months ago3