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google-deepmind
/
alphafold
Open source code for AlphaFold.
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12415
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220
Issues:
852
Forks:
2210
google-deepmind/alphafold Issues
ImportError: cannot import name 'SCOPData' from 'Bio.Data'
Updated
a day ago
Comments count
7
alphafold outputs only have msas
Updated
9 months ago
Comments count
4
AlphaFold Colab crash at 'Search genetic databases' stage: Keras Zeros initializer fault...
Closed
8 months ago
Comments count
2
AlphaFold Stuck at hhblits Step on Cluster Compute Node
Updated
9 months ago
Install third-party software stalls at 17%
Updated
8 months ago
Comments count
1
Resource not found: pdb70_from_mmcif_200401.tar.gz
Closed
9 months ago
Comments count
1
SymbolAlreadyExposedError: Symbol Ones is already exposed as ()
Closed
8 months ago
Comments count
1
Notebook - Cell 4 "Making Prediction" - SymbolAlreadyExposedError
Closed
8 months ago
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4
HOW to change MSA
Updated
9 months ago
Comments count
3
Error On Section 4, Symbol Zeros is already exposed as ()
Closed
8 months ago
Comments count
5
SymbolAlreadyExposedError
Closed
8 months ago
Comments count
16
Linux ARM64 an officially supported platform ?
Updated
10 months ago
No GPU/TPU found
Closed
10 months ago
Comments count
5
Failed to find source directory "/home/gpux1/alphafold/uniref90" to mount in Docker container.
Updated
8 months ago
Comments count
6
400 Client Error: Bad Request for url: http+docker://localhost/v1.43/containers/create
Updated
10 months ago
alphafold doesn't work in RTX 4090?
Updated
10 months ago
Comments count
2
docker.errors.DockerException: Error while fetching server API version: HTTPConnection.request() got an unexpected keyword argument 'chunked'
Updated
20 days ago
Comments count
25
using non-public structures
Updated
10 months ago
The installation step 4 couldn't be excuted without sudo
Updated
10 months ago
Comments count
2
INVALID_ARGUMENT: invalid shape type
Updated
7 months ago
Comments count
1
CUDA errors occured RTX4090, Driver Version: 520.61.05 , Ubuntu 20.04, CUDA 18.0 running alphafold.
Updated
9 months ago
Comments count
3
AlphaFold Colab runs keep getting stuck at AMBER relaxation step
Updated
10 months ago
Comments count
8
proteins containing thioester bonds
Updated
a year ago
ERROR: Could find neither hhm_db nor a3m_db!
Closed
a year ago
Comments count
2
Is it still running ? First time using Alphafold in local.
Updated
8 months ago
Comments count
1
disable HHsearch/HHblits when using precomputed msas
Updated
6 months ago
Comments count
5
AF-multimeter executing time question
Updated
a year ago
Comments count
1
The latest but not yet released alphafold
Updated
10 months ago
Comments count
2
"TypeError: HTTPConnection.request() got an unexpected keyword argument 'chunked'" error while running AlphaFold
Updated
4 months ago
Comments count
12
module 'jax' has no attribute 'xla'
Closed
a year ago
Comments count
1
HHblits error: sequences in fasta file do not all have the same number of columns
Updated
a year ago
Comments count
1
Request: add REMARK with AlphaFold version and model used in every output PDB file
Updated
a year ago
jax._src.traceback_util.UnfilteredStackTrace: AttributeError: module 'jax.dtypes' has no attribute 'prng_key'
Updated
a year ago
Comments count
13
"Install third-party software" gets stuck at 17%
Updated
a year ago
Comments count
2
Issue with pdb70 "ValueError: Could not find HHsearch database."
Closed
a year ago
Comments count
2
I am trying to install alphafold without docker version and after successful installation and activation of the environment, I am still getting the following error.
Closed
9 months ago
Comments count
1
Features for minimal input?
Updated
a year ago
How can I export the tensorflow checkpoints?
Updated
a year ago
Unstable iptm+ptm
Closed
a year ago
Comments count
2
failing to download obsolete.dat
Closed
a year ago
Comments count
2
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Closed
a year ago
Comments count
3
download_pdb_seqres.sh uses HTTP, only works for FTP
Closed
a year ago
Comments count
2
ImportError: cannot import name 'notebook_utils' from 'alphafold.notebooks' (unknown location)
Updated
4 months ago
Comments count
3
Question about FAPE loss
Updated
2 months ago
Why XLA_PYTHON_CLIENT_MEM_FRACTION is set to "4.0" in run_docker.py
Closed
a year ago
Comments count
1
Execution of replica 0 failed: INTERNAL: Failed to load in-memory CUBIN: CUDA_ERROR_ILLEGAL_ADDRESS: an illegal memory access was encountered
Updated
a year ago
Comments count
3
Modifying a features.pkl file to crop/replace residues with a linker?
Updated
a year ago
Which file should I use from Alphafold output?
Closed
9 months ago
Comments count
3
Timeout while submitting to MSA server. Retrying...
Closed
a year ago
Comments count
1
AttributeError: module 'jax' has no attribute 'xla'
Closed
a year ago
Comments count
1
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