DDuchen's repositories
BBMap
(Not Offical) BBMap short read aligner, and other bioinformatic tools.
CPANG19
CPANG19 - Computational PANGenomics (2019)
dekupl
Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
dsk
k-mer counting software
gatb-core
Core library of the Genome Analysis Toolbox with de-Bruijn graph
GenABEL
:exclamation: This is a read-only mirror of the CRAN R package repository. GenABEL — genome-wide SNP association analysis. Homepage: http://www.genabel.org, http://forum.genabel.org,<U+000a>http://genabel.r-forge.r-project.org/ Report bugs for this package: http://r-forge.r-project.org/tracker/?group_id=505
HaploConduct
Haplotype-aware genome assembly toolkit
Hepatitis_B_Virus_alignment
Scripts for Fully automated sequence alignment methods outperform traditional methods for phylogenetic analysis of hepatitis B viruses
kameris
A fast, user-friendly analysis and evaluation toolkit for some DNA sequence classification tasks
LRECE
Long read error correction evaluation
phyloscanner
Phylogenetics between and within hosts at once, all along the genome.
pyseer
SEER, reimplemented in python 🐍🔮
rs-gfatovcf
Rust implementation of Flavia95's GFAtoVCF
seqwish
alignment to variation graph inducer
stdpopsim
A library of standard population genetic models
Variant-graph-analysis
Measuring pairwise distances between population graphs built from variant data from the 1000 genomes project.
VGpop
Selection scans on VG