Derek Tam's repositories
align-rna
Nextflow workflow for RNA alignment using STAR and HISAT2
atac-pipe
Fragment of scATAC-seq analysis pipeline with ML cell type classification
av-cpg
Average CpG calls per sample for multiple genes and output a binary pos/neg status for each gene individually.
cimp-predictor
A prototype predictor of cancer CIMP status using RNA expression data.
drop-aberrant-splicing-report
R markdown analysis report for DROP AS results
ratemyprof-vis
Pet project to visualize ratings for UBC professors on RateMyProf.
ubc-rest
A learning project for the implementation of a database, queries, and a RESTful interface.
ex-cpg
Script to recursively extract CpG calls over a specific region for multiple files.
extract-sample-vcf
Workflow to extract a single sample VCF from a set of chromosome-wise VCFs
rna-sv-caller
Pipeline for validation of structural variants by RNA-seq against WGS variants
wunderground
FlowingDataCh2