The Healthcare Enterprise Repository for Ontological Narration (HERON) is a method to integrate clinical and biomedical data for translational research. The bulk of the functionality is provided by i2b2; this code is the regulatory enforcement web interface.
- Copyright
Copyright 2010-2019 University of Kansas Medical Center
To start a server in development mode, follow pyramid norms (with python2.7 rather than python3):
cd heron-admin
virtualenv env
./env/bin/pip install -e ".[testing]"
# Reset our environment variable for a new virtual environment.
export VENV=~/heron_admin/env
- -- if runnig with python3
cd heron-admin python3 -m venv env env/bin/pip install --upgrade pip setuptools env/bin/pip install -e . OR ./env/bin/pip install -e ".[testing]" ... more steps to come
$VENV/bin/pserve development.ini
In production, more extensive configuration is required.
See setup.py, devdoc for details.
Please cite us as:
- Waitman LR, Warren JJ, Manos EL, Connolly DW. Expressing Observations from Electronic Medical Record Flowsheets in an i2b2 based Clinical Data Repository to Support Research and Quality Improvement. AMIA Annu Symp Proc. 2011;2011:1454-63. Epub 2011 Oct 22.
- Tamara M. McMahon, Daniel W. Connolly, Bhargav Adagarla, Lemuel R. Waitman. Role of Informatics Coordinator in Catalyzing Adoption of a Self-Service Integrated Data Repository Model AMIA 2014 Summit on Clinical Research Informatics
This work was supported by a CTSA grant from NCRR and NCATS awarded to the University of Kansas Medical Center for Frontiers: The Heartland Institute for Clinical and Translational Research # UL1TR000001 (formerly #UL1RR033179). The contents are solely the responsibility of the authors and do not necessarily represent the official views of the NIH, NCRR, or NCATS.