Daniel Burkhardt's repositories
academic-www
📖 Documentation site for Academic Website Builder
cellHarmony-Align
Single-Cell RNA-Seq community alignment function for matching query to reference cells.
CellOracle
This is the alpha version of the CellOracle package
cellranger
10x Genomics Single Cell 3' Gene Expression and VDJ Assembly
meghna-hugo
Meghna Hugo is a responsive one-page business template built with HTML5/CSS3, Hugo, JavaScript, and JQuery. The template is minimalist, lightweight, and fast loading.
memory-monitor
Monitors process group memory usage, sends periodic updates and warnings
Palantir
Single cell trajectory detection
personal_site
📝 Easily create a beautiful website using Academic, Hugo, and Netlify
pycisTopic
pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
scanpy
Single-cell analysis in Python. Scales to >1M cells.
scenicplus
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
sigcom-lincs
Signature Commons LINCS Repo
single-cell-best-practices
https://www.sc-best-practices.org
SingleCellOpenProblems
Formalizing and benchmarking open problems in single-cell genomics
starter-hugo-project-documentation
📖 Project Docs / Knowledge Base template for Hugo Website Builder. 创建项目文档
starter-hugo-research-group
👥 轻松创建研究组或组织网站 Create a stunning Research Group, Team, or Organization Website with Hugo