Deborah Siegel's repositories
genologics-geneus-lims-tools
Java/groovy interface to GenoLogics Geneus LIMS via its REST API and postgreSQL db.
genomic_pca_with_spark_and_adam
code for Seattle Spark Meetup Machine Learning Roundtable 10/14/2015
datasketch
MinHash, LSH, LSH Forest, Weighted MinHash, HyperLogLog, HyperLogLog++
dipper
Data Ingestion Pipeline for SciGraph
fastai-course22
The fast.ai course notebooks
fastai_deeplearn_part1
Notes for Fastai Deep Learning Course - Part 1 v2
fluent-python-notebooks
Jupyter notebooks and example code for the book Fluent Python
gatk
GATK4 development
getting_and_cleaning_data
coursera course: Getting and Cleaning Data
hugging-face-cli-with-codespaces
Repo that allows me to build AI tools on top of Hugging Face
popstrat
Population Stratification Analysis on Genomics Data Using Deep Learning
remoto
Remote commands (or processes calls) in Python.
spark
Mirror of Apache Spark
spark-genome-alignment-demo
An example of bioinformatics and bigdata tools can playing nicely together
spark-notebook-examples
Some notebook examples related to Apache Spark, IPython / Jupyter, Zeppelin
spark-pr-dashboard
Dashboard to aid in Spark pull request reviews
Spark_For_Everyone_DBCE_edition
slides and demos for Spark For Everyone DBCE edition
SparkR-pkg
R frontend for Spark
vagrant-projects
Vagrant projects for various use-cases with Spark, Zeppelin, IPython / Jupyter, SparkR
wwconnect-2016-spark4everyone
[WW]Connect 2016 workshop: Apache Spark For Everyone