Xi Chen's repositories
pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
ChIP-seq-analysis
ChIP-seq analysis notes from Tommy Tang
graph_abstraction
Generate cellular maps of differentiation manifolds with complex topologies.
single-cell-pseudotime
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
13_questions_of_shell
shell十三问--shell教程（markdown 版本）
ads1-notebooks
Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
ads1-slides
Slides for Algorithms for DNA Sequencing Coursera class
GraphEmbed
Compute a 2D embedding of a data matrix given supervised class information.
osx-terminal.app-colors-solarized
Solarized color theme for OS X 10.7+ Terminal.app
PythonDataScienceHandbook
Python Data Science Handbook: full text in Jupyter Notebooks
scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
wtfpython
A collection of interesting, subtle, and tricky Python snippets.