Dan Bolser's repositories
arrayexpress-cram-submission
A python pipeline for submitting CRAM files generated by ArrayExpress to the European Nucleotide Archive (ENA)
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Bio-DB-HTS
Git repo for Bio::DB::HTS module on CPAN, providing Perl links into HTSlib
Dream_TF_net
Convolutional Neural Networks for the Encode-Dream Transcription Factor Binding Challenge
eg-web-plants
modules required to set up EG Plants mirror
eg-web-pre
modules/files required to set up any of the EG pre website
ensembl-analysis
Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
ensembl-compara
The Ensembl Compara Perl API and SQL schema
ensembl-datacheck
Code for checking Ensembl databases during release production
ensembl-funcgen
Ensembl Funcgen Perl API and SQL schema
ensembl-production
Ensembl Production code
ensembl-retreat-2018
Some files used by the "MPI/multi-threaded software in eHive/LSF" session during the Ensembl retreat 2018
ensembl-variation
The Ensembl Variation Perl API and SQL schema
ensj-healthcheck
Ensembl's Automated QC Framework
homebrew-science
:beer::microscope: Scientific formulae for the Homebrew package manager
TeachingMaterial
RNA-seq data analysis practical
transPLANT-Search
The Solr implementation of the transPLANT integrated search schema
VCFLoad-simple
A tool for converting VCF into TSV suitable for loading into the Ensembl Variation schema