David Lyon's repositories
PandasIntro
Interactive Data Analysis in Python with Pandas using Jupyter Notebook
deamidation
Calculate deamidation rates (Asparagine to Aspartic acid and Glutamine to Glutamic acid) of peptides/proteins/RawFiles for LC/MS data.
statistical-analysis-python-tutorial
Statistical Data Analysis in Python
cathsm-server
Backend server for protein structure modelling pipeline (CATH/SWISS-MODEL)
cmapPy
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
datasharing
The Leek group guide to data sharing
dotfiles
config files
fishers_exact_test
Fishers Exact Test for Python (Cython)
gunicorn
gunicorn 'Green Unicorn' is a WSGI HTTP Server for UNIX, fast clients and sleepy applications.
mod_sites_and_prob
command line script to parse modification sites and their probabilities from MaxQuant evidence.txt, optional setting to filter on probabilities
pCLAP_Tryp2LysC
This is a proteomics tool to map tryptic peptides to Lys-C peptides
protover
Automated protein turnover calculations from 15N partial metabolic labeling LC/MS shotgun proteomics data.
TPP
Statistical analysis of Thermal Proteome Profiling experiments for drug-target detection by multiplexed proteomics