dbikard / genomenotebook

A genome browser in your Jupyter notebook

GenomeNotebook

Install

pip install genomenotebook

Upgrade

New versions of genomenotebook are released on a regular basis. Make sure to upgrade your installation to enjoy all the features.

pip install genomenotebook --upgrade

How to use

Create a simple genome browser with a search bar. The sequence appears when zooming in.

Tracks can be added to visualize your favorite genomics data. See Examples for more !!!!

import genomenotebook as gn

g=gn.GenomeBrowser(gff_path=gff_path, genome_path=fasta_path, init_pos=10000)
g.show()

Documentation

https://dbikard.github.io/genomenotebook/