Dhananjay Bhaskar's repositories
Research-Scripts
Modelling (CompuCell3D, CHASTE & CellProfiler) and image analysis for M.Sc. thesis at UBC
Metaheuristic-Algorithms
Implementation of metaheuristic algorithms and empirical analysis
AAnet
Archetypal Analysis network (AAnet)
AMS-MRC-2018
AMS Agent-Based Modeling Workshop
awesome-tda
A curated list of topological data analysis (TDA) resources and links.
BrownU-BioMed
Agent-based models, image segmentation and TDA for doctoral research at BrownU
challenge-iclr-2022
GitHub repository for the ICLR Computational Geometry & Topology Challenge 2021
fMRI-Reconstruction
Reconstruct fMRI from MEG and vice-versa
MPSO-ParamILS
Using ParamILS to configure memetic particle swarm optimization algorithm
dbhaskar92.github.io
Personal academic website
GEFMAP
GEFMAP leverages the graph structure of metabolic networks to learn the metabolic objective of cells and estimate relative flux rates of reactions
ipsearch
Search for hostnames and IP addresses in large log files
LaTeX
Selected LaTeX documents to serve as templates for future reference
MAGIC
MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
MIOFlow
Trajectory inference for single-cell sequencing data
PHATE
PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.
SAUCIE
SAUCIE (Sparse Autoencoder for Unsupervised Clustering, Imputation, and Embedding) is a deep neural network to process and extract structure from scRNA-seq and CyTOF data, addressing challenges like noise, complexity, sparsity, and batch effects
server-utils
Server setup and administration
Slick-Game-Framework
Framework for creating LWJGL games using Box2D Physics Engine
SummerWork2018
Summer Workshop (GNU/Linux, version control, Python, R, distributed computing)
Zebrafish-Pigmentation-TDA
Topological data analysis of Zebrafish skin pigmentation patterns