Beast code in Giters

Bertrand Denis's starred repositories

fgbio

Tools for working with genomic and high throughput sequencing data.

Language:ScalaMIT30600

clinvarome

Project code to generate a comprehensive annotated clinvarome from variant alert outputs

Language:PythonApache-2.0100

OPERA-MS

OPERA-MS - Hybrid Metagenomic Assembler

Language:C++NOASSERTION8800

BEEM

BEEM: Estimating Lotka-Volterra models from time-course microbiome sequencing data

Language:RMIT900

SpliceAI

A deep learning-based tool to identify splice variants

Language:PythonNOASSERTION38700

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

Language:CythonMIT76900

Basecalling-comparison

A comparison of different Oxford Nanopore basecallers

Language:PythonGPL-3.031300

nanopolish

Signal-level algorithms for MinION data

Language:C++MIT55200

antismash

antiSMASH

Language:PythonAGPL-3.017300

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

Language:Perl79200

lofreq

LoFreq Star: Sensitive variant calling from sequencing data

Language:CNOASSERTION9800

CaDRReS

Cancer Drug Response prediction using a Recommender System

Language:PythonGPL-3.04100

DAS_Tool

DAS Tool

Language:RNOASSERTION13600

Flye

De novo assembler for single molecule sequencing reads using repeat graphs

Language:CNOASSERTION75200

spades

SPAdes Genome Assembler

Language:C++NOASSERTION72600

dbertran78