Brain and Behavioral Sciences Laboratory Pavia

bsb-core

The Brain Scaffold Builder

bsb

Metadata repository for the `bsb` package, which installs the `bsb-core` framework and a default set of plugins.

cereb-nest

Module for NEST simulator developed in the Project CerebNEST, aiming to recreate and simulate in NEST realistic cerebellar-inspired models.

glia

NMODL asset manager

models

Collection of neuron models for the NEURON simulator

patch

A Pythonic object-oriented drop-in replacement for the Python interface to NEURON

arborize

A Python package that allows Arbor-like descriptions of cell models for NEURON.

astrocyte

Packager for Glia. Distribute your models amongst the stars

dystonia_ebcc

Code to simulate mouse models of dystonia during EyeBlink Classical Conditioning (EBCC), described in Geminiani et al., Front Syst Neurosci, 2022.

annotateCerebellum

Tools to visualize and correct cerebellum volumetric annotations

bsb-arbor

Arbor simulation adapter for the BSB framework

bsb-brian

BSB plugin for the Brian simulator

bsb-hdf5

The HDF5 storage engine of the BSB

bsb-json

JSON configuration parser and tooling for the BSB

bsb-nest

NEST simulation adapter for the BSB framework

bsb-neuron

NEURON simulation adapter for the BSB framework

bsb-plotting

Plotting tools for the BSB framework

bsb-test

Helps component developers build tests for BSB components

bsb-webstack

bsb-yaml

YAML parser for the BSB framework

catalogue

Mechanism catalogue for the DBBS NMODL asset collection.

ccio

Integrated CC and IO model

dbbs-mod-collection

Glia package containing all our mod files

dbbs-tools

Repository to build our Docker image with all the required tools that are used in the laboratory.

deschepper-etal-2021

Images and videos used in De Schepper et. al. (2021)

modelling-intro

Introductory course to neural modelling

nrn-diff

NEURON object differ

sphinxext-bsb

Sphinx extension for the BSB documentation

state-estimator

Code implementing a spiking state estimator as in Grillo et al., 2022

student-umbrella

Students, don't let your enthousiasm get rained on. This umbrella will (soon) cover all the material you need to be familiar with for a successful thesis at our lab