Microbial community surveys reveal Pseudomonas bloom in sorghum rhizosphere composed of closely-related, abundant phylotypes
Dawn Chiniquy1,4, Jinglie Zhou1, Kyle Hartman1, Xiaohui Li, Amy Sheflin2, Allyn Pella3, Ellen Marsh3, Jessica Prenni2, Adam M. Deutschbauer4, Daniel Schachtman3, and Susannah G. Tringe1*
1 Department of Energy, Joint Genome Institute, Walnut Creek, CA, 94598, USA 2 Department of Horticulture and Landscape Architecture, Colorado State University, Fort Collins, CO, USA 3 Department of Agronomy and Horticulture and Center for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, USA 4 Department of Energy, Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
Included in this repository are code and input files used to generate figures and analysis as part of the manuscript entitled "Microbial community surveys reveal Pseudomonas bloom in sorghum rhizosphere composed of closely-related, abundant phylotypes" submitted by Dawn Chiniquy for publication to Fronteirs in Microbiology.
Raw sequence files have been uploaded to NCBI under BioProject XXX