Davide Cittaro's repositories
schist-notebooks
Some example notebooks for scNSBM package
scTips_Twitter
Some random code about single cell stuff to share with my Tweeps
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
cellrank
CellRank for directed single-cell fate mapping
dawe.github.io
Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll
ecosystem-packages
Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
fit_nbinom
Negative binomial maximum likelihood estimate implementation in Python using L-BFGS-B
HiCExplorer
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
mofapy2
Multi-omics factor analysis v2
schist-feedstock
A conda-smithy repository for schist.
scikit-bio
scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.
scikit-fusion
scikit-fusion: Data fusion via collective latent factor models
sinto
Tools for single-cell data processing
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
SurpriseMeMore
Module to detect mesoscale structures (community, core-periphery, bipartite) on Graphs and Multigraphs using surprise.
tensorly
TensorLy: Tensor Learning in Python.