davidroberson

tvc

Torrent Variant Caller

cgrFunctional

assoctool

Association tool

bdcatalyst-demo

cwl_apps

Collection of CWL apps descriptions. Some are in progress.

cgrDNA

Project to document the NGS DNA variation calling pipelines in use at DCEG

code_docker_lib

Dockerized tools for the Center for Omics Discovery and Epidemiology

dbgap2x

DeepBlues

Artificially generated 12-bar blues melodies using Recurrent Neural Networks

demo-gwas

CWL repository

Epigenomics_CWL

SCREW: A Reproducible Workflow for Single-Cell Epigenomics

exceRpt

Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets

fusioncatcher

Somatic fusion genes finder for RNA-seq data

gene-expression-and-heart-failure

Differential expression & pathway analysis of heart failure

hotspot3d

3D hotspot mutation proximity analysis tool

ICI

icr-workshop

ICR Workshop

Individual_Level_PrediXcan

MarkovBlues

Artificially generated 12-bar blues melodies using Variable-length Markov models and Probabilistic Suffix Trees

MEGAnE

MEGAnE

mtag

Python command line tool for Multi-Trait Analysis of GWAS (MTAG)

my-tool

my project

predixcan_tools

STAR_protocols_GV_calling

For questions about the scripts in this project please contact Divya Sahu (dsahu@uab.edu or sahu.divya786@gmail.com)

timer-tab

Source code of Timer Tab

TitanCNA

A Factorial-HMM for analyzing subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer. See https://github.com/gavinha/TitanCNA-utils for a convenient script to run TitanCNA.

TS

Torrent Suite

vep

VEP Workflow with CWL descriptions

workflow-inference-compiler

A domain specific language for creating scientific pipelines

workflow-notebooks