davidroad / DeepFace

DeepFace

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##DeepFace use basenji as the backbone model ##Install https://github.com/calico/basenji in virtual environment basenji

source activate basenji

##preprocess the bigWig file following these steps https://github.com/calico/basenji/blob/master/tutorials/preprocess.ipynb

##train model ! /PATH_to/DeepFace_train.py -o /PATH_to_save_model/ /PATH_to_params.json /PATH_to_processed_bigwig_data

##more details please check https://github.com/calico/basenji

1787by204_SAD.csv contains the SAD score for 1787 OFC-related variants (input_1787_OFC_variants.txt) across 204 craniofacial development epigenomic profiles (OFC_204_profile_wigs.txt).

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DeepFace


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