davidrajm / tax-credit-code

Microbiome benchmarking code and jupyter notebooks from the tax-credit project

TAX CREdiT: TAXonomic ClassifieR Evaluation Tool

This repository contains the tax-credit python 3 package for use in the tax-credit project, a standardized and extensible evaluation framework for assessing short-read taxonomic classifiers.

Please see the tax-credit-data repository for usage and citation information and published results.

Setup and install

The library code can be installed as follows:

git clone https://github.com/caporaso-lab/tax-credit-code.git
cd tax-credit-code
pip install .

OR

pip install https://github.com/caporaso-lab/tax-credit-code/archive/master.zip