davidpross

s3fs-fuse

FUSE-based file system backed by Amazon S3

juicefs

JuiceFS is a distributed POSIX file system built on top of Redis and S3.

nextflow

A DSL for data-driven computational pipelines

annotated_deep_learning_paper_implementations

🧑‍🏫 60 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠

starcoder

Home of StarCoder: fine-tuning & inference!

jupyter_rfb

Remote Frame Buffer for Jupyter

ibis

the portable Python dataframe library

rapids_singlecell

Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.

oxbow

Read specialized NGS formats as data frames in R, Python, and more.

CellChat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

zellkonverter

Conversion between scRNA-seq objects

Rarr

A simple native R reader for Zarr Arrays

minerva_analysis

ttyd

Share your terminal over the web

log4r

A log4j derivative for R.

jupyter-remote-desktop-proxy

Run a Linux Desktop on a JupyterHub

zarr-python

An implementation of chunked, compressed, N-dimensional arrays for Python.

arrow

Apache Arrow is a multi-language toolbox for accelerated data interchange and in-memory processing

visidata

A terminal spreadsheet multitool for discovering and arranging data

xarray-spatial

Raster-based Spatial Analytics for Python

tldraw

SDK for creating whiteboards and canvas experiences on the web.

RawTherapee

A powerful cross-platform raw photo processing program

docker-cheat-sheet

Docker Cheat Sheet

cirrocumulus

Bring your single-cell data to life

paste

Probabilistic Alignment of Spatial Transcriptomics Experiments

awesome-vector-tiles

Awesome implementations of the Mapbox Vector Tile specification

viv

Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

deck.gl

WebGL2 powered visualization framework

cypress

Fast, easy and reliable testing for anything that runs in a browser.

napari-hub

Discover, install, and share napari plugins