davidjtoomer

RetroCHEM

A command-line tool for simple, single-step retrosynthetic reaction prediction using graph partitioning.

Impact-Visualizer

A Plotly-Dash web app to visualize surface profilometry data.

openmm-numpy-reporters

Python reporters for simulations in OpenMM saved in the NumPy file format (.npy). Ideal for storing e.g. forces, velocities, potential energies of conformations in simulations that are easily loaded into NumPy arrays.

CeRNetwork

codeclr

Final project for Stanford's CS329M (Machine Programming). Unsupervised contrastive learning of code embeddings.

crochetplanner

Tool for rapidly planning large and complex crochet projects.

davidjtoomer

davidtoomer.com

Personal website [IN PROGRESS]

egnn-pool

E(n)-equivariant pooling for graph neural networks.

led-simon

A basic implementation of the game Simon on an 8x8 LED array with an Arduino UNO.

meta-learn-force-fields

Learning neural network potentials using meta-learning. Final project for Stanford's CS330: Deep Multi-Task and Meta-Learning

Proteomic-Profiling

A protein subcellular location labeler, developed for use in the Svensson Lab at the Stanford School of Medicine Department of Pathology.

santa-clara-covid

Live visualizations of public COVID-19 data in Santa Clara County.