davidhildebrand

CATMAID

Collaborative Annotation Toolkit for Massive Amounts of Image Data

hildebrand16

XINTRINSIC

cross-linear (X) polarization enhanced INTRINSIC imaging

autoencoded-vocal-analysis

Learn acoustic features with variational autoencoders

beautiful-jekyll

✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com

CaImAn

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

CaImAn-MATLAB

Complete Matlab pipeline for large scale calcium imaging data analysis

CCN_caiman_mesmerize_workshop_2023

Repo for CCN workshop on caiman and mesmerize in January 2023

ChKshared

eyeloop

EyeLoop is a Python 3-based eye-tracker tailored specifically to dynamic, closed-loop experiments on consumer-grade hardware.

fiji

Fiji Is Just ImageJ

fluffy-goggles

gt_pickup_annotation

Annotate relative position of section to slot from staining/pickup images

MARIPETS

mattermost-server

Open source Slack-alternative in Golang and React - Mattermost

mesmerize-core

High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn

MultiCamSelfCal

multiple camera self calibration Toolbox

occupancy_networks

This repository contains the code for the paper "Occupancy Networks - Learning 3D Reconstruction in Function Space"

oculomatic-release

High Speed Eye Tracking for Point Gray USB3.0 Cameras

PHATE

PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

psychopy

For running psychology and neuroscience experiments

rotki

A portfolio tracking, analytics, accounting and tax reporting application that respects your privacy

seqNMF

An algorithm for unsupervised discovery of sequential structure

SouthwestCheckin

🛫 Python script to checkin to a Southwest Flight 🛬

STNeuroNet

Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," (IN PRESS) Proceedings of the National Academy of Sciences (PNAS), 2019.

suite2p

cell detection in calcium imaging recordings

SyncMessCleaner

Python program to clean the mess you and or Syncthing may have accidentally created

thewarden

Open Source Portfolio Tracker for Bitcoin

TrakEM2

ImageJ plugin for morphological data mining, 3D modeling and image stitching, registration, editing and annotation.

VAME

Variational Animal Motion Embedding