davidcotter

GenomeD3Plot

SVG based genome viewer written in javascript using D3

genomics

Biocircos.js

BioCircos.js - interactive circos for biological data

CNVcaller

cnvnator

CNVnator Docker Image

codespacetest

ContextualDecomposition

Demo for method introduced in "Beyond Word Importance: Contextual Decomposition to Extract Interactions from LSTMs"

davidcotter

Config files for my GitHub profile.

DeepLearningProject

An in-depth machine learning tutorial introducing readers to a whole machine learning pipeline from scratch.

fabric-web

Taking the magic of fabric and throwing up as a website for ease of use.

gLuhn.py

Check / Generate PAN based on Luhn algorithm

gmi_fastq_metrics

FASTQ Metrics Module to calculate Q30

gor

GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.

helb.github.io

http://helb.github.io

highcharts_trendline

HighCharts demo of scatter plot, including a trend line

htslib

C library for high-throughput sequencing data formats

labs

Rmd source files for the HarvardX series PH525x

nextflow

A DSL for data-driven computational pipelines

nf-hello

Classic hello world script in Nextflow language

node-http-proxy

A full-featured http proxy for node.js

pinball

preprocess

Preprocess HTML, JavaScript, and other files with directives based off custom or ENV configuration

pyensembl

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

pynnotator

This is a Genome Annotation Framework developed with the goal of annotating VCF files (Exomes or Genomes) from patients with Mendelian Disorders.

react-flux-cart

Code for the tutorial by @kenwheeler: Create a Shopping Cart Using React.js and Flux

tophat

Spliced read mapper for RNA-Seq