davidaknowles

leafcutter

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

eagle

An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified from RNA-seq

dox

Determining the genetic basis of anthracycline-cardiotoxicity by molecular response QTL mapping in induced cardiomyocytes

pydt

Pitman Yor diffusion tree sampler

suez

R package for mapping response-expression QTLs

eagle1S

Re-implementation of EAGLE using Stan.

lacrosse

lacrosse: LAtent ChaRacteristics Of Small-molecule SEnsitivity. David A Knowles, Gina Bouchard, Sylvia Plevritis.

pisquared

R package to estimate sharing between two arrays of p-values

regtools

Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.

adaglm

AeroPython

Classical Aerodynamics of potential flow using Python, for Prof. Barba's course at GW (1st version:Spring 2014, 2nd run:2015).

brie

BRIE: Bayesian Regression for Isoform Estimate in Single Cells

casopr

Continuous Annotation-aware Shrinkage Of Polygenic Risk

davidaknowles.github.io

Github Pages homepage

denoising-diffusion-pytorch

Implementation of Denoising Diffusion Probabilistic Model in Pytorch

dplyr

dplyr: A grammar of data manipulation

eagle2

Environment-ASE through Generalized LinEar modeling, v2

edward_BetaBinomial

Beta binomial likelihood for Edward

git-gud

Material for a presentation I gave on ramping up with Git.

gpu-finder

idg_dream

Illuminating the Druggable Genome (IDG)-DREAM Challenge

implicit

LOBICO

Fork of LOBICO with some installation details

Mini-Conf

Run a conference from your backyard.

mlcb.github.io

Machine Learning in Computational Biology workshop site

poolqtl

poster_town

RefManageR

R package RefManageR

SwabSeq

v200

Proceedings of MLCB 2022