David Steinberg's repositories
synevalharness
Sandbox for testing workflow execution through the Synapse evaluation API
cgp-dss-data-loader
Simple data loader for CGP HCA Data Store
biocontext
JSON-LD Contexts for Bioinformatics Data
celldb
celldb - Database for functional genomics
dos-gdc-lambda
Access Genomic Data Commons data using GA4GH libraries
dos-downloader
Download data using GA4GH DOS
topmed-cwl
This is cwl pipeline for alignment potentially used for TopMed data analysis
squark
A library for manipulating bioinformatics sequencing formats in Apache Spark.
libcloud
Apache Libcloud is a Python library which hides differences between different cloud provider APIs and allows you to manage different cloud resources through a unified and easy to use API
identifier-interoperability
Guidelines for designing data platforms that support GUID resolution
pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
faiss
A library for efficient similarity search and clustering of dense vectors.
rdfstore-js
JS RDF store with SPARQL support
ga4gh-schemas
Work on data models and APIs for Genomic data.
translator-api-registry
This repo hosts the API metadata for the Translator project
hco
Human chromosome ontology
prednet
Code and models accompanying "Deep Predictive Coding Networks for Video Prediction and Unsupervised Learning"
SpoonFedNanopore
The world's simplest open-source nanopore alignment and assembly algorithm
martha
Google Cloud Function for Blue Box/GUID resolution
vg
tools for working with genome variation graphs
hca-bundle-jsonld-lambda
Generate RDF from HCA bundles using a AWS microservice
minid
Minimal Viable Identifier
openwebrtc
A cross-platform WebRTC client framework based on GStreamer