david-castillo's repositories
TADbit
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell000
colvars
Collective variables module for molecular simulation and analysis programs
Language:C++LGPL-3.0000
lammps
Public development project of the LAMMPS MD software package
Language:C++GPL-2.0000
Language:PythonGPL-3.0000
TADkit
3D Genome Browser
Language:JavaScriptMIT000