davemcg

David McGaughey's repositories

scEiaD

Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas

Language:Jupyter NotebookCC0-1.023 2 9

scripts

Scripts to do little jobs

Language:Python8 20

eyeIntegration_app

Shiny code to run eyeIntegration on EiaD data

Language:HTMLNOASSERTION5 3 6

variant_prioritization

Workflows taking Exome/WGS fastq files to prioritized variants

Language:Python4 20

EiaD_build

Snakemake pipeline to create EiaD dataset for eyeIntegration

Language:HTML3 3 9

OGVFB_RNAseq

Generic RNA-seq quant for OGVFB group

Language:Python3 20

plaeApp

Language:HTMLNOASSERTION3 2 11

NGS_genotype_calling

Language:Shell2 20

Snakerail

Language:ShellCC0-1.02 10

metamoRph

Language:Jupyter NotebookNOASSERTION1 10

2024_04_20_NEI_Vision_Course

Language:HTML010

aaaView

Language:RNOASSERTION010

ahp_rna

Language:HTML010

cellmer

Language:Python010

cellqc

Language:PythonMIT000

chick_analysis_collab

Language:HTML020

CNC

010

epigenetic_eye

000

eyeMarkers

Lists of genes that mark different cells populations in mammalian eyes

Language:R020

geyser

Language:RNOASSERTION010

ipsc_rpe_atac

Hufnagel Lab

Language:HTML020

metaRPE

Compilation of RPE transcriptomes

Language:HTML020

notes

020

OGVFB_CRISPR_WGS

Workflow to assess CRISPR targetting with WGS

010

phylogeny

010

plaeApp_manuscript

Language:HTML020

sc_mouse_OFC_e11

Language:HTML010

scEiaD_modeling

Language:PythonCC0-1.0010

scEiaD_quant

Sample Level Quantification for scEiaD Downstream Use

Language:RCC0-1.0010

UP_Ward5

code base to track changes to ward5 distill blog

Language:HTML020