Segun Christopher Jung's repositories
ThousandVariantCallersRepo
Thousand Variant Callers Project Repository
GeneFuse
Gene fusion detection and visualization
UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets
RefGeneTxtToBed
Convert UCSC refGene.txt to bed format
msisensor
microsatellite instability detection using tumor only or paired tumor-normal data
ensembl-vep
The Variant Effect Predictor predicts the functional effects of genomic variants
moving
sales
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
slurm-centos7
Installation for the Slurm workload manager on a CentOS 7 cluster.
elprep
elPrep: a high-performance tool for preparing sequence alignment/map files in sequencing pipelines.
vcftools
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
read-trimmer
Paired end trimmer for QIASeq DNA/RNA reads
gdc_snp
GDC SNP analysis using DNN
mouse_microarray_analysis
DE analysis and GSEA analysis
pavar
Pathogenic Variant Reporter based on gene symbols
btools
A series of scripts to automate the execution of commands within a cluster.
MANTIS
Microsatellite Analysis for Normal-Tumor InStability
tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
qiaseq-dna
example code for processing reads from QIAGEN QIAseq DNA enrichment kits
mothur
Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.
MG-RASTv4
next generation metagenome analysis
qiime2
Official repository for the QIIME 2 framework.
awesome-public-datasets
A topic-centric list of high-quality open datasets in public domains. By everyone, for everyone!