DataJoint

datajoint-python

Relational data pipelines for the science lab

element-deeplabcut

DataJoint Element for behavioral analysis with DeepLabCut

datajoint-tutorials

Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples

workflow-array-ephys

Example DataJoint workflow for Neuropixels analysis with Kilosort

element-calcium-imaging

DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT

datajoint-docs

Landing Page for DataJoint Documentation

element-array-ephys

DataJoint Element for Neuropixels analysis with Kilosort

element-facemap

DataJoint Element for behavioral analysis with Facemap

element-interface

Common functions for the DataJoint Elements

element-moseq

DataJoint Element for Motion Sequencing with Keypoint-MoSeq

pharus

Pharus is a generic REST API server backend for DataJoint pipelines built on top of flask, datajoint, and pyjwt.

compress-multiphoton

Compression for multiphoton calcium imaging movies and stacks

djlabhub-docker

A docker image optimized for deploying to JupyterHub a JupyterLab environment with DataJoint Python.

element-session

DataJoint Element for session management

element-miniscope

DataJoint Element for miniscope calcium imaging analysis with CaImAn

sciops-summit-2024

DataJoint SciOps Summit - Schedule

djlab-docker

A docker image optimized for running a JupyterLab environment with DataJoint Python.

.github

Organizational default configs for @datajoint repos

CaImAn

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

datajoint-file-validator

A framework for validating DataJoint files and filesets

element-electrode-localization

DataJoint Element for localizing Neuropixels electrodes

element-event

DataJoint Element for event-based behavior experiments

element-optogenetics

DataJoint Element for optogenetic experiments

element-zstack

DataJoint Element for volumetric data analysis using Cellpose

manual-letsencrypt

nginx-docker

poisson-numcodecs

Numcodecs implementation of photon conversion using poisson statistics

sciops-summit-2024-datajoint-101

Course materials for the DataJoint 101 track -- DataJoint SciOps Summit 2024

suite2p

cell detection in calcium imaging recordings

workflow-deeplabcut

Example DataJoint workflow for behavioral analysis with DeepLabCut