Components of an automated ChIPseq and ATACseq pipeline
Downstream pipeline components available here: https://github.com/CBIIT/ChIP_seq
added by Berkley E. Gryder, March 2020
Scripts and code protocol for calculating Pause Index (aka Traveling Raio) from Pol2 ChIP-seq data https://github.com/GryderArt/ChIPseqPipe/tree/master/TravelingRatio
added by Berkley E. Gryder, Janurary 2021
Scripts, code protocol and video tutorial for plotting ChIP-seq data around gene sets of interest https://github.com/GryderArt/ChIPseqPipe/tree/master/plotTSSheat
