Dan Xie (silly cat)'s repositories
Image_toolbox
This is my toolbox for image processing and downstream analysis of calcium imaging data.
Small-Devices
A collection of Python-based control modules for USB-interfaced small devices.
caffe
Caffe: a fast open framework for deep learning.
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
CalAnalyzer
The downstream analysis toolbox of processed calcium imaging data. Former 'analysis' and 'visualization' folders in the repository 'Image_toolbox'. A GUI module is included.
FIJI_tools
A collection of handy FIJI macros for image processing.
Filter_wheel
A filter wheel controller system based on Arduino and Parallax servos.
Phase_Retrieval
An implementation of the phase-retrieval algorithm for pupil function calculation.
Everglades
This is the control program for the microscope Everglades in Huang lab.
github_io
Silly cat's silly lab.
keras
Deep Learning library for Python. Runs on TensorFlow, Theano, or CNTK.
libtim-py
Personal utility library
pycpd
Pure Numpy Implementation of the Coherent Point Drift Algorithm
ultrasound-nerve-segmentation
Deep Learning Tutorial for Kaggle Ultrasound Nerve Segmentation competition, using Keras
Z-Brain
Z-Brain Viewer and Analysis Scripts for MAP-Mapping