to use this package you must have and environment variable named MWAS_GWAS_DIR
pointing to the top-level git repo folder.
you can add the line "export MWAS_GWAS_DIR=/path/to/mwasgwas" to the file
".bash_profile" in your home directory
required libraries in R
repos = 'http://cran.mtu.edu' #install.packages('infotheo',repos=repos) install.packages('randomForest',repos=repos) install.packages('vegan',repos=repos) install.packages('optparse',repos=repos) install.packages('MASS',repos=repos) install.packages('car',repos=repos) install.packages('edgeR',repos=repos)