danielshaowers

SupCon-Framework

Implementation of Supervised Contrastive Learning with AMP, EMA, SWA, and many other tricks

barplots

Python package to easily make barplots from multi-indexed dataframes.

coral-pytorch

CORAL and CORN implementations for ordinal regression with deep neural networks.

sacred

Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.

HistoQC

HistoQC is an open-source quality control tool for digital pathology slides

stainTransfer_CycleGAN_pytorch

Image-to-Image Translation in PyTorch

semantic-image-editing

manim

Animation engine for explanatory math videos

mit-deep-learning-book-pdf

MIT Deep Learning Book in PDF format (complete and parts) by Ian Goodfellow, Yoshua Bengio and Aaron Courville

CLIP

CLIP (Contrastive Language-Image Pretraining), Predict the most relevant text snippet given an image

contrastive-unpaired-translation

Contrastive unpaired image-to-image translation, faster and lighter training than cyclegan (ECCV 2020, in PyTorch)

SupContrast

PyTorch implementation of "Supervised Contrastive Learning" (and SimCLR incidentally)

stain-mixup

The repository provide augment function of "Stain mix-up: Unsupervised domain generalization for histopathology images"

StainTools

Tools for tissue image stain normalisation and augmentation in Python 3

RandStainNA

RandStainNA: Simple and efficient augmentations for histology [MICCAI 2022]

TransPath

VICRegL

VICRegL official code base

Awesome-Transformer-Attention

An ultimately comprehensive paper list of Vision Transformer/Attention, including papers, codes, and related websites

DiffDRR

Auto-differentiable digitally reconstructed radiographs in PyTorch

Awesome-Diffusion-Models

A collection of resources and papers on Diffusion Models

RobustAutoencoder

A combination of Autoencoder and Robust PCA

hover_net

Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.

PathFlow-MixMatch

Don't mix, match! Simple utilities for improved registration of Histopathology Whole Slide Images.

WSIRegistration

BIRL

BIRL: Benchmark on Image Registration methods with Landmark validations

hact-net

CLAM

Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

Unsupervised-Nuclei-Segmentation-using-Spatial-Organization-Priors

Code for the paper Unsupervised Nuclei Segmentation using Spatial Organization Priors.

longitudinal-neighbourhood-embedding

Self-supervised Longitudinal Neighbourhood Embedding (LNE), MICCAI2021 & Speicial Issue on Medical Image Analysis

obsidian-publish-mkdocs

A Template to Publish Obsidian/Foam Notes on Github Pages (uses MkDocs)