Daniel Nakhaee-Zadeh's starred repositories
platechain
LLMs for microplate data
ProteinFlow
Versatile computational pipeline for processing protein structure data for deep learning applications.
protpardelle
Diffusion-based all-atom protein generative model.
aligned_diffusion_bridges
Aligned Diffusion Schroedinger Bridges (UAI 2023)
protein_scoring
Generating and scoring novel enzyme sequences with a variety of models and metrics
conditional-flow-matching
TorchCFM: a Conditional Flow Matching library
pyhamilton
Python for Hamilton liquid handling robots
automancer
Automancer is a software application that enables researchers to design, automate, and manage their experiments.
ColabDesign
Making Protein Design accessible to all via Google Colab!
ProteinFlow-models
Modifications of ProteinMPNN trained on ProteinFlow data