danielecook

nushell

A new type of shell

uPlot

📈 A small, fast chart for time series, lines, areas, ohlc & bars

quickjs

Public repository of the QuickJS Javascript Engine.

just-the-docs

A modern, high customizable, responsive Jekyll theme for documentation with built-in search.

pml-book

"Probabilistic Machine Learning" - a book series by Kevin Murphy

layout-parser

A Unified Toolkit for Deep Learning Based Document Image Analysis

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

igv-reports

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

awesome-bioinformatics-benchmarks

A curated list of bioinformatics bench-marking papers and resources.

dsub

Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

zippy

Pure Nim implementation of deflate, zlib, gzip and zip.

forge

High Performance Visualization

WFA-paper

Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment

rust-mdbg

minimizer-space de Bruijn graphs (mdBG) for whole genome assembly

readfq

Fast multi-line FASTA/Q reader in several programming languages

ksw2

Global alignment and alignment extension

genomics-research

perbase

Per-base per-nucleotide depth analysis

seqfu2

:rocket: seqfu - Sequece Fastx Utilities

iMessageWrapped

Visualizing and Exploring iMessage data

ropebwt2

Incremental construction of FM-index for DNA sequences

rare-disease-wf

(WIP) best-practices workflow for rare disease

cpsr

Cancer Predisposition Sequencing Reporter (CPSR)

VariantWorks

Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/

Opossum

Opossum is a tool to pre-process RNA-seq reads prior to variant calling.

zwift-steerer

Work on creating a steerer for Zwift

margin

tnsv

add true-negative SVs from a population callset to a truth-set.

actc

Align subreads to ccs reads

TreeDataOCR

Converts image files to newick notation