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Daniel Fulop (danfulop)

danfulop

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26

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60

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Company:https://lifeminetx.com/

Location:Greater Boston

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Bioinformatics-SFSU

Daniel Fulop's starred repositories

awesome-public-datasets

A topic-centric list of HQ open datasets.

License:MITStargazers:59674Issues:2269Issues:113

homemade-machine-learning

🤖 Python examples of popular machine learning algorithms with interactive Jupyter demos and math being explained

Language:Jupyter NotebookLicense:MITStargazers:22863Issues:938Issues:27

Virgilio

Your new Mentor for Data Science E-Learning.

Language:Jupyter NotebookLicense:NOASSERTIONStargazers:13854Issues:788Issues:43

statrethinking_winter2019

Statistical Rethinking course at MPI-EVA from Dec 2018 through Feb 2019

Stargazers:2016Issues:173Issues:36

hrbrthemes

:lock_with_ink_pen: Opinionated, typographic-centric ggplot2 themes and theme components

Language:RLicense:NOASSERTIONStargazers:1221Issues:24Issues:47

skimr

A frictionless, pipeable approach to dealing with summary statistics

Language:HTMLStargazers:1100Issues:32Issues:262

bayeslite

BayesDB on SQLite. A Bayesian database table for querying the probable implications of data as easily as SQL databases query the data itself.

Language:PythonLicense:Apache-2.0Stargazers:919Issues:59Issues:495

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

Language:RStargazers:822Issues:37Issues:490

tidybayes

Bayesian analysis + tidy data + geoms (R package)

Language:RLicense:GPL-3.0Stargazers:711Issues:24Issues:306

poly

A Go package for engineering organisms.

Language:GoLicense:MITStargazers:661Issues:13Issues:165

ggalt

:earth_americas: Extra Coordinate Systems, Geoms, Statistical Transformations & Scales for 'ggplot2'

Language:RLicense:NOASSERTIONStargazers:654Issues:29Issues:64

progress

Progress bar in your R terminal

Language:RLicense:NOASSERTIONStargazers:463Issues:9Issues:103

PHATE

PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

Language:PythonLicense:GPL-2.0Stargazers:460Issues:19Issues:75

Pweave

Pweave is a scientific report generator and a literate programming tool for Python. It can capture the results and plots from data analysis and works well with numpy, scipy and matplotlib.

Language:PythonLicense:NOASSERTIONStargazers:435Issues:19Issues:120

gratia

ggplot-based graphics and useful functions for GAMs fitted using the mgcv package

Language:RLicense:NOASSERTIONStargazers:202Issues:10Issues:279

lecture_notes

Lecture Notes on Computational and Mathematical Population Genetics

Stargazers:184Issues:19Issues:0

Bioinformatics-Workshops

Workshops presented by the Gladstone Bioinformatics Core

Language:HTMLStargazers:177Issues:21Issues:19

statebins

Alternative to choropleths of US States ala http://bit.ly/statebins

Language:RLicense:NOASSERTIONStargazers:124Issues:10Issues:18

Bioinformatics-training-collection

A collection of resources for learning about tools and programming languages related to Bioinformatics

Stargazers:118Issues:2Issues:3

abcpy

ABCpy package

Language:PythonLicense:BSD-3-Clause-ClearStargazers:110Issues:14Issues:24

hyde-y

Enhanced port of the Jekyll "Hyde" theme to Hugo

Language:CSSLicense:MITStargazers:88Issues:9Issues:25

propr

[OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data

Language:RStargazers:64Issues:4Issues:35

bioinfo-tools

Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.

Language:PythonLicense:GPL-3.0Stargazers:53Issues:3Issues:1

seqotron

Alignment editor for Mac OS X

Language:Objective-CLicense:GPL-3.0Stargazers:28Issues:8Issues:5

fido

Multinomial Logistic-Normal Models (really fast)

Language:RStargazers:19Issues:4Issues:10

philr

Phylogenetic Isometric Log Ratio

Language:RStargazers:19Issues:5Issues:23

physher

A multi-algorithmic framework for phylogenetic inference

Language:CLicense:GPL-2.0Stargazers:14Issues:6Issues:2

mimix

MIMIX: a Bayesian Mixed-Effects Model for Microbiome Data from Designed Experiments

Language:JuliaLicense:MITStargazers:11Issues:5Issues:10

PrimerDesign

Design primers for species-specific qPCR

Language:PythonStargazers:8Issues:2Issues:1

sleuth-CN

Improve Differential Analysis using Compositional Data Analysis

Language:RLicense:GPL-3.0Stargazers:5Issues:4Issues:5