danchubb

CanVar

Framework based upon ExAC to provide study specific variant frequencies

alleleCount-FixVAF

Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings). Altered so that it clips all reads by n bases to reduce reference bias.

containers

Bioinformatics containers

FixVAF

Code to remove bias from Isaac aligned data by clipping all reads for variant positions by 5 bases and producing a modified vcf file.

hg38MutSpot

hg39 version of MutSpot

MutSpot

randomcode

place for some random code

rnaflow

A simple RNA-Seq differential gene expression pipeline using Nextflow

SigProfilerExtractor

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

something-unique

TcellExTRECT