Dana Silverbush's repositories
Deconvolution_of_GBM_bulk_DNA_methylation_profiles
Code and profiles to perform deconvolution of bulk DNA methylation profiles, providing an estimate of the abundance of immune, glia, neuron and the stem-like and differentiated intra tumoral malignant cell state components.
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Single-cell-multi-omics-profiling-of-human-gliomas
Code for Chaligne, Gaiti, Silverbush, Schiffman et al. paper “Epigenetic encoding, heritability and plasticity of glioma transcriptional cell states”
Diffuse2Direct
Orientation of the protein-protein interaction network using network diffusion techniques
Language:Jupyter Notebook000
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ModulOmics
Infers cancer driver modules from DNA, RNA, PPI and regulatory network.