ggfortify

This package offers fortify and autoplot functions to allow automatic ggplot2 to visualize statistical result of popular R packages. Check out our R Journal paper for more details on the overall architecture design and a gallery of visualizations created with this package. Also check out autoplotly package that could automatically generate interactive visualizations with plotly.js style based on ggfortify. The generated visualizations can also be easily extended using ggplot2 syntax while staying interactive.

Note: For functions which returns list, ggfortify tries to infer a background class using its attribute names. Such functions are marked as "(inference)".

Installation

Install the latest stable release from CRAN: :
```
install.packages('ggfortify')
```

Install the development version from Github: :

if (!require("remotes")) install.packages("remotes")
remotes::install_github('sinhrks/ggfortify')

Examples

Reference/Citation ------------

To cite ggfortify in publications, please use (available via citation("ggfortify")):

Yuan Tang, Masaaki Horikoshi, and Wenxuan Li (2016). ggfortify: Unified Interface to Visualize Statistical Result of Popular R Packages. The R Journal, 8.2, 478-489.

Masaaki Horikoshi and Yuan Tang (2016). ggfortify: Data Visualization Tools for Statistical Analysis Results. https://CRAN.R-project.org/package=ggfortify

Coverage

This covers following classes:

base::matrix
base::table (supports fortify only)
cluster::clara
cluster::fanny
cluster::pam
cluster::silhouette
changepoint::cpt
dlm::dlmFilter
dlm::dlmSmooth (inference)
fGarch::fGARCH
forecast::bats
forecast::forecast
forecast::ets
forecast::nnetar
fracdiff::fracdiff
glmnet::cv.glmnet
glmnet::glmnet
KFAS::KFS
KFAS::signal (inference)
lfda::lfda
lfda::klfda
lfda::self
maps::map
MASS::isoMDS (inference)
MASS::sammon (inference)
raster::RasterBrick
raster::RasterCommon
raster::RasterLayer
raster::RasterStack
ROCR::performance
sp::Line
sp::Lines
sp::Polygon
sp::Polygons
sp::SpatialLines
sp::SpatialLinesDataFrame
sp::SpatialPoints
sp::SpatialPointsDataFrame
sp::SpatialPolygons
sp::SpatialPolygonsDataFrame
splines::basis
stats::acf
stats::ar
stats::Arima
stats::cmdscale (inference)
stats::decomposed.ts
stats::density
stats::factanal
stats::glm
stats::HoltWinters
stats::kmeans
stats::lm
stats::prcomp
stats::princomp
stats::spec
stats::stepfun
stats::stl
stats::ts
survival::survfit
survival::survfit.cox
survival::survfitms
strucchange::breakpoints
strucchange::breakpointsfull
timeSeries::timeSeries
tseries::irts
vars::varprd
xts::xts
zoo::zooreg

Helper Functions

ggdistribution to plot PDF/CDF
ggcpgram to plot cpgram
ggtsdiag to plot tsdiag
ggfreqplot to generalize monthplot

ggplot2 Families

There are some useful plotting packages using ggplot2. ggfortify will not focus on area already covered by these packages.

About

Define fortify and autoplot functions to allow ggplot2 to handle some popular R packages.

Languages

Language:R 100.0%