Giovanni Dall'Olio's repositories
bioinformatics-career-survey
Survey of bioinformatics field
selectionTools
Pipeline to take VCF through to Selection Analysis.
hierarchicalBoosting
an R-package to execute the 'Hierarchical Boosting' framework
peb_workshop
Advanced R workshop for the PEB conference
bioinf-python
Python for Bioinformatics
biomart
Python biomart API
biopython
Official git repository for Biopython (converted from CVS)
biostar-central
BiosStar Q&A
datasharing
The Leek group guide to data sharing
docker_play
playing with docker
dplyr
Plyr specialised for data frames: faster & with remote datastores
EIG
Eigen tools by Nick Patterson and Alkes Price lab
eigensoft
Experimental EIGENSOFT performance improvements.
ExData_Plotting1
Plotting Assignment 1 for Exploratory Data Analysis
ggbio
Grid and ggplot2 based visualization for biological data
hierfstat
Estimation and tests of hierarchical F-statistics
hungergames
Hunger Games competition from Brilliant.org
luigis_monkey_wrench
Some tools to make writing bioinformatics and other heavy shell-based workflows easier in luigi
ngseasy
Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
pipeline_play
a pipeline for calculating Fst
pyfasta
fast, memory-efficient, pythonic (and command-line) access to fasta sequence files
pygenomics
A library for next generation genomics in Python 3
qmem
Memory reporting tool for SGE
rclinicaltrials
An interface to the clinicaltrials.gov API
SelectionPipelineTestData
Selection Pipeline Test Data.
selscan
Haplotype based scans for selection
vcftools_custom
customization of vcftools