Beast code in Giters

David Alexander's repositories

bauhaus

minimal tertiary analysis for PacBio

Language:PythonNOASSERTION300

DumbView

A PacBio genome browser for command line nerds

Language:Python3 30

fqgrep

An approximate sequence pattern matcher for FASTQ/FASTA files.

Language:C2 20

pbdoctorb

PacBio data inspection/munging tools (unsupported)

Language:Python2 30

PRmm

PulseRecognizer minus minus

Language:Python200

GenomicConsensus

PacBio® variant and consensus caller

Language:PythonNOASSERTION1 10

jax

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

Language:PythonApache-2.0100

pbcore

A Python library for reading and writing PacBio® data files

Language:PythonNOASSERTION1 10

bauhaus2

For testing only

Language:RNOASSERTION000

BlockPuzzle

Language:Haskell000

BoggleSolver

Language:Haskell020

emacs

Language:Emacs Lisp020

gfftools

Perl scripts for working with the GFF format

Language:Perl020

gists

Language:C++020

htslib

C library for high-throughput sequencing data formats

Language:CNOASSERTION000

htslib_tell_issue

Language:C000

meep

free finite-difference time-domain (FDTD) software for electromagnetic simulations

Language:C++GPL-2.0010

PRmm-notebooks

IPython notebooks using the PRmm APIs

Language:Jupyter Notebook000

pysam_issue

Language:C020

QuiverModeling

Predictive model of Quiver accuracy

Language:R000

style-guard-demo

code style/formatting enforcement using clang-format

Language:C++020

SWIG-BamTools

SWIG bindings for BamTools

Language:C++020