daler / metaseq

Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data

https://daler.github.io/metaseq

daler/metaseq Issues

cannot import name 'data_dir' from 'helpers'
Updated 8 months ago1
multiprocessing
Updated 4 years ago3
use of bedGraphs in genomic_signal
Updated 5 years ago
IndexError AND Value error
Closed 8 years ago3
Example1 problem#3 can't find metaseq
Updated 5 years ago
subplots using metaseq.plotutils.imshow
Updated 5 years ago
metaseq is supported by python 3?
Closed 9 years ago7
Segmentation fault
Updated 5 years ago
sample snippet for the ChIP signal visualization?
Updated 6 years ago1
how can I use the bam file to draw the figure which contain the tss ,gene body and tts? thank you!
Updated 6 years ago3
Example1 problem #2
Updated 7 years ago8
mapped_read_count() OSError: No such file or directory
Closed 7 years ago1
How is missing data interpreted?
Updated 7 years ago9
genomic_signal
Updated 8 years ago10
Bamsignal attributes
Closed 8 years ago1
ValueError: x and y must have same first dimension
Closed 8 years ago
py3: relative imports fail
Updated 8 years ago8
Issue with Example 1
Closed 8 years ago2
Splitting arrays
Closed 8 years ago3
A problem when running the script
Closed 8 years ago4
MetaSeq on non-traditional files that have already been binned?
Closed 8 years ago8
Can the browser be used to programmatically create graphs for genes of interest?
Closed 8 years ago2
Example 1 problem
Updated 8 years ago3
genomic signal array
Closed 8 years ago19
hg19 Random Chromosome Issues
Closed 9 years ago1
Syntax help
Closed 9 years ago
Tutorial ambiguity
Closed 9 years ago3
plotutils.imshow for just a heatmap alone
Closed 9 years ago1
Too many files open
Closed 10 years ago3
clustering heatmap and identifying genes
Closed 10 years ago1
evaluate CWig
Updated 10 years ago
global name stats not defined
Closed 10 years ago1
missing dependencies
Closed 11 years ago1
Incompatible with sklearn = 0.14.1
Closed 11 years ago3
SignalMiniBrowser is not defined
Closed 11 years ago1
metaseq mouse mm9 gtf file ensemble error
Closed 11 years ago2
install issues
Closed 12 years ago3