daiuc / cookiecutter-quarto-blog-smk

cookiecutter for quarto blog website and snakemake

cookiecutter-quarto-snakemake-workflow

Cookiecutter template for snakemake workflows and quarto.

Blog created with

quarto create-project --type website --template blog

INSTALL

Install cookiecutter:

pip install cookiecutter

Start creating a snakemake-workflow from cookiecutter:

cookiecutter https://github.com/daiuc/cookiecutter-quarto-blog-smk.git

CREATE BLOG POSTS OR WEB PAGES

Use Rstudio or your favorite IDE to create *.qmd files and render. Rendered html files are automatically saved in docs, which can be set up for gh-page.

• Note for blog posts, create a folder for your article, and in it, create a index.qmd file.

• For regular web pages, create a folder under root, a landing page, e.g. index.qmd. Modify navbar and start adding pages.

SNAKEMAKE PIPELINES

All snakemake pipeline stuff reside under code, that includes your data files in resources and results. By default resources and results are ignored from git.