daisieh

plann

Plann: a command-line application for annotating plastome sequences

phylogenomics

(Mostly) Perl scripts that do something related to phylogenomic analysis.

git-novice

Software Carpentry introduction to Git for novices.

TreeFig

Converter that takes a figure of a phylogenetic tree and calculates a tree notation.

nexml.java

Java API for NeXML.

beacon-v2

Unified repository for the GA4GH Beacon v2 API standard

botocore

The low-level, core functionality of boto 3.

brew

🍺 The missing package manager for macOS

bucket-antivirus-function

Serverless antivirus for cloud storage.

connexion

Swagger/OpenAPI First framework for Python on top of Flask with automatic endpoint validation & OAuth2 support

create_invoice

Cyverse_Setup

A repository for documentation about how the Cyverse VM was set up.

data-repository-service-schemas

A repository for the schemas used for the Data Repository Service.

dryad

Codebase for the collaboration of Dryad and Dash data publication and curation services.

dryad-config-example

An example configuration repository to start from for the dash2 application

dryad-repo

Dryad is a repository for data underlying scientific literature. Dryad allows investigators to validate published findings, explore new analysis methodologies and repurpose the data for research questions unanticipated by the original authors. The core code of Dryad comes from the DSpace repository software. Developers using the Dryad code should first familiarize themselves with DSpace. Documentation specific to the Dryad codebase can be found in the Dryad wiki.

dryad-utils

Scripts for Dryad maintenance tasks

igv.js

Embeddable genomic visualization component based on the Integrative Genomics Viewer

lmc_carshare

map_data_for_ingest

MesquiteCore

The core Mesquite repository

migration-utils

Utility scripts to assist in migration from old Dryad to new Dryad

opsgenie-oas

shell-novice

Software Carpentry introduction to the shell for novices.

stash

A UC3 application framework for storing and sharing research data

swc_github_flow

Instructions for contributing to free and open source software lesson materials hosted by Software Carpentry https://github.com/swcarpentry/swcarpentry

taxonworks

Workbench for biodiversity informatics.

throughputdb

The repository for the throughput Annotation Database. Cypher Queries & Case Studies

vagrant-dryad

Vagrant and Ansible config for building a Dryad VM

web-scripts

Web scripts for server